Cedars-Sinai Biostatistics Fall Quarter -Assignments and other material

Instructor: Jeff Gornbein gornbein@g.ucla.edu 310-825-4193

 

Class topics schedule & texts (subject to change) Handy EXCEL functions

Suggested texts: Petrie and Sabin (P&S) Medical Statistics at a Glance 3rd ed, Blackwell Pub, Reinhart A, Statistics Done Wrong, No Starch Press 2015

Wainer Howard, Truth or Truthiness, Cambridge University Press 2015

 

Class presentation slides by topic

 

Class notes:

Section 1-confounding, bias, study design

Section 2-descriptive stats, sensitivity & specificity, Bayesian stats

Section 3-probability distributions

Sections 4 and 5 hypothesis testing (Section 4), power (Section 5)

Section 6-comparing means and analysis of variance (ANOVA)

Section 7-comparing proportions-chi square

Section 8a-simple regression - Section 8b-multiple regression

Section 9-logistic and poisson regression (may not be covered)

Section 10- Survival in preparation (see slides)

 

Statistical reporting-slides

 

Semi serious stat survey a screening test (not for a grade)

 

Assignments:

Assignment 1 due 21 Sept 2016 Peters article Staudmauer article

 

Assignment 2 due 3 Oct 2016

 

Assignment 3 due 24 Oct 2016 Julian article

 

Assignment 4 due 14 Nov 2016

Assignment 5 due 28 Nov 2016 Testosterone article

 

Assignment 6 optional Atkins vs Zone article

 

 

Final Project

 

Note that assignments count for 50% of the final grade!

Final presentation is 45% of grade!

 

Other papers: Stratton & Neil -how to ensure paper is rejected

Ioannidis why published results can be false

 

Exam questions (from 2009)

Extra problem sets (practice)

 

Excel demos and model calculators

Cox model survival calculator

 

Datasets in EXCEL (for JMP and other illustrations):

Fat

PSA

Birth weight (BWEIGHT)

Svol

Clond BP data

Clond TBI data (used in ANOVA)

PCO data in JMP format used for regression

Depression (CESD) data in JMP format-used for regression Depression data dictionary

Chung-Prati cancer survival data in JMP format